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"Top Ten" Publications

I have selected these based upon a combination of criteria.  Some are among my most frequently-cited papers and others are personal favorites.  Actually, below you will find two "top 10" lists: the first contains papers reporting original research and the second consists of influential review articles or commentaries.  Recently (January 2008) I was asked to provide a list of my five most important papers along with the rationales for my selection.  My "top five" are indicated by asterisks in the table below and the rationales may be found here.

Original Research
  • *Boguski, M. S., Elshourbagy, N., Taylor, J. M. and Gordon, J. I. (1984) "Rat apolipoprotein A-IV contains 13 tandem repetitions of a 22-amino acid segment with amphipathic helical potential." Proc Natl Acad Sci U S A 81(16): 5021-5. |PubMed|PDF|
  • *Boguski, M. S. and McCormick, F. (1993) "Proteins regulating Ras and its relatives." Nature 366(6456): 643-54. |PubMed|PDF| Cited 1475 times as of 17 March 2008
  • *Boguski, M. S., Lowe, T. M. and Tolstoshev, C. M. (1993) "dbEST--database for "expressed sequence tags"." Nat Genet 4(4): 332-3.  |PubMed|PDF| Cited 717 times as of 17 March 2008
  • Madej, T., Boguski, M. S. and Bryant, S. H. (1995) "Threading analysis suggests that the obese gene product may be a helical cytokine." FEBS Lett 373(1): 13-8. |PubMed|PDF|
  • Schuler, G. D., Boguski, M. S., ... Lander, E. S. and Hudson, T. J. (1996) "A gene map of the human genome." Science 274(5287): 540-6.  |PubMed|PDF| Cited 772 times as of 17 March 2008
  • *Bassett, D. E., Jr., Boguski, M. S., Spencer, F., Reeves, R., Kim, S., Weaver, T. and Hieter, P. (1997) "Genome cross-referencing and XREFdb: implications for the identification and analysis of genes mutated in human disease." Nat Genet 15(4): 339-44. |PubMed|PDF|
  • Ermolaeva, O., Rastogi, M., Pruitt, K. D., Schuler, G. D., Bittner, M. L., Chen, Y., Simon, R., Meltzer, P., Trent, J. M. and Boguski, M. S. (1998) "Data management and analysis for gene expression arrays." Nat Genet 20(1): 19-23.  |PubMed|PDF|
  • Makalowski, W. and Boguski, M. S. (1998) "Evolutionary parameters of the transcribed mammalian genome: an analysis of 2,820 orthologous rodent and human sequences." Proc Natl Acad Sci U S A 95(16): 9407-12.  |PubMed|PDF|
  • Shatkay, H., Edwards, S., Wilbur, W. J. and Boguski, M. (2000) "Genes, themes and microarrays: using information retrieval for large-scale gene analysis." Proc Int Conf Intell Syst Mol Biol 8: 317-28.  |PubMed|PDF|
  • Kuehl, P., Zhang, J., et al. (2001). "Sequence diversity in CYP3A promoters and characterization of the genetic basis of polymorphic CYP3A5 expression." Nat Genet 27(4): 383-91.|PubMed|PDF| Cited 557 times as of 17 March 2008
  • *Shoemaker, D. D., Schadt, E. E., ...and Boguski, M. S. (2001) "Experimental annotation of the human genome using microarray technology." Nature 409(6822): 922-7.  |PubMed|PDF|
  • Lein, E. S., Hawrylycz, M. J., Ao, N., Ayres, M., Bensinger, A., Bernard, A., Boe, A. F., Boguski, M. S., ... and Jones, A. R. (2007) "Genome-wide atlas of gene expression in the adult mouse brain." Nature 445(7124): 168-76. |PubMed|PDF|
Reviews and Commentaries
  • Boguski, M. S. (1992) "Computational sequence analysis revisited: new databases, software tools, and the research opportunities they engender." J Lipid Res 33(7): 957-74. |PubMed|PDF|
  • Boguski, M. S. (1994) "Bioinformatics." Curr Opin Genet Dev 4(3): 383-8.  |PubMed|PDF|
  • Altschul, S. F., Boguski, M. S., Gish, W. and Wootton, J. C. (1994) "Issues in searching molecular sequence databases." Nat Genet 6(2): 119-29.  |PubMed|PDF|
  • Boguski, M. S. (1995) "Hunting for genes in computer data bases." N Engl J Med 333(10): 645-7.  |PubMed|PDF|
  • Boguski, M. S. and Schuler, G. D. (1995) "ESTablishing a human transcript map." Nat Genet 10(4): 369-71. |PubMed|PDF|
  • Boguski, M. S. (1995) "The turning point in genome research." Trends Biochem Sci 20(8): 295-6. |PubMed|PDF|
  • Hieter, P. and Boguski, M. (1997) "Functional genomics: it's all how you read it." Science 278(5338): 601-2.  |PubMed|PDF|
  • Boguski, M. S. (1999) "Biosequence exegesis." Science 286(5439): 453-5.  |PubMed|PDF|
  • Boguski, M. S. (2002) "Comparative genomics: the mouse that roared." Nature 420(6915): 515-6.  |PubMed|PDF|
  • Boguski, M. S. and McIntosh, M. W. (2003) "Biomedical informatics for proteomics." Nature 422(6928): 233-7. 7 |PubMed|PDF|
  • Boguski, M. S. and Jones, A. R. (2004) "Neurogenomics: at the intersection of neurobiology and genome sciences." Nat Neurosci 7(5): 429-33. |PubMed|PDF|

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